Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA114647999
[wgsExptID] => 27
[Batch] => CRUKCI_5
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] => 2023-10-10
[FastqID] => 652
[wgsID] => 413
[fwdFile] => LR_39147_R1.fastq.gz
[fwdMd5] => ac22d2c7040672680e5db0abbf77bc75
[revFile] => LR_39147_R2.fastq.gz
[revMd5] => 96f50cd107c88e4b37b50f414cc7279b
[rawReads] => 454277208
[FastqRCS] => 1
[enaExperiment] => ERX11756792
[enaRun] => ERR12380220
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1512
[wgsID] => 413
[refGenome] => cf4
[dateSubmitted] => 2023-12-19 11:51:52
[dateCompleted] => 2023-12-20 01:14:48
[bamMd5] => 1294ba8013b743c506f8628254a605a8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 445591450
[primaryReads] => 442118295
[mappedReads] => 443146113
[primaryMapped] => 439672958
[pairedReads] => 432857918
[meanInsertSize] => 428.00
[meanReadDepth] => 19.91
[variantsCalled] => 6144917
[variantsFiltered] => 5890922
[snpCount] => 4134842
[snpHom] =>
[snpHet] =>
[indelCount] => 1764793
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ22157309
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ221/ERZ22157309/LR_39147-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242