Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA114647999
                    [wgsExptID] => 27
                    [Batch] => CRUKCI_5
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 2023-10-10
                    [FastqID] => 652
                    [wgsID] => 413
                    [fwdFile] => LR_39147_R1.fastq.gz
                    [fwdMd5] => ac22d2c7040672680e5db0abbf77bc75
                    [revFile] => LR_39147_R2.fastq.gz
                    [revMd5] => 96f50cd107c88e4b37b50f414cc7279b
                    [rawReads] => 454277208
                    [FastqRCS] => 1
                    [enaExperiment] => ERX11756792
                    [enaRun] => ERR12380220
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1512
                    [wgsID] => 413
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-12-19 11:51:52
                    [dateCompleted] => 2023-12-20 01:14:48
                    [bamMd5] => 1294ba8013b743c506f8628254a605a8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 445591450
                    [primaryReads] => 442118295
                    [mappedReads] => 443146113
                    [primaryMapped] => 439672958
                    [pairedReads] => 432857918
                    [meanInsertSize] => 428.00
                    [meanReadDepth] => 19.91
                    [variantsCalled] => 6144917
                    [variantsFiltered] => 5890922
                    [snpCount] => 4134842
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1764793
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ22157309
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ221/ERZ22157309/LR_39147-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242