Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721116
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 618
                    [wgsID] => 368
                    [fwdFile] => LR_40133_R1.fastq.gz
                    [fwdMd5] => dce8f320f4dac932e1359a4ae35f70e0
                    [revFile] => LR_40133_R2.fastq.gz
                    [revMd5] => 7c3528a65634121d0e8a56026349e4db
                    [rawReads] => 782529096
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632457
                    [enaRun] => ERR11203073
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 837
                    [wgsID] => 368
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-21 14:38:00
                    [dateCompleted] => 2023-06-22 10:05:00
                    [bamMd5] => 414b45d397f210e92b14d5b851f583d4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 527474240
                    [primaryReads] => 
                    [mappedReads] => 526334780
                    [primaryMapped] => 
                    [pairedReads] => 509193128
                    [meanInsertSize] => 424.85
                    [meanReadDepth] => 26.58
                    [variantsCalled] => 5913696
                    [variantsFiltered] => 5606499
                    [snpCount] => 3917915
                    [snpHom] => 2135286
                    [snpHet] => 1782629
                    [indelCount] => 1696092
                    [insHom] => 360517
                    [delHom] => 497950
                    [insHet] => 390664
                    [delHet] => 474401
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817129
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817129/LR_40133-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242