Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721116
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 618
[wgsID] => 368
[fwdFile] => LR_40133_R1.fastq.gz
[fwdMd5] => dce8f320f4dac932e1359a4ae35f70e0
[revFile] => LR_40133_R2.fastq.gz
[revMd5] => 7c3528a65634121d0e8a56026349e4db
[rawReads] => 782529096
[FastqRCS] => 1
[enaExperiment] => ERX10632457
[enaRun] => ERR11203073
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 837
[wgsID] => 368
[refGenome] => cf4
[dateSubmitted] => 2023-06-21 14:38:00
[dateCompleted] => 2023-06-22 10:05:00
[bamMd5] => 414b45d397f210e92b14d5b851f583d4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 527474240
[primaryReads] =>
[mappedReads] => 526334780
[primaryMapped] =>
[pairedReads] => 509193128
[meanInsertSize] => 424.85
[meanReadDepth] => 26.58
[variantsCalled] => 5913696
[variantsFiltered] => 5606499
[snpCount] => 3917915
[snpHom] => 2135286
[snpHet] => 1782629
[indelCount] => 1696092
[insHom] => 360517
[delHom] => 497950
[insHet] => 390664
[delHet] => 474401
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817129
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817129/LR_40133-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242