Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190098
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 225
[wgsID] => 297
[fwdFile] => MAL_24992_R1.fastq.gz
[fwdMd5] => 419a40cfb5e559c7c3029a8b0a4c1db0
[revFile] => MAL_24992_R2.fastq.gz
[revMd5] => 3554e19208bda0574089902e2bec38d2
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664694
[enaRun] => ERR11256485
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 266
[wgsID] => 297
[refGenome] => cf4
[dateSubmitted] => 2022-11-24 12:34:00
[dateCompleted] => 2022-11-25 06:16:00
[bamMd5] => 27a5fb6952c58791d1e468788e55fa55
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 908150551
[primaryReads] =>
[mappedReads] => 875937418
[primaryMapped] =>
[pairedReads] => 854603500
[meanInsertSize] => 480.56
[meanReadDepth] => 45.57
[variantsCalled] => 6294458
[variantsFiltered] => 5943473
[snpCount] => 4151921
[snpHom] => 1955123
[snpHet] => 2196798
[indelCount] => 1801886
[insHom] => 317870
[delHom] => 439665
[insHet] => 492287
[delHet] => 590582
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21778103
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778103/MAL_24992-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242