Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296813
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 626
                    [wgsID] => 1
                    [fwdFile] => MHD_34771_R1.fastq.gz
                    [fwdMd5] => da3dfd79b9f4cabdd4cc08fb058281fc
                    [revFile] => MHD_34771_R2.fastq.gz
                    [revMd5] => 1eb4c4fb3b32b353f5ad47b950f43459
                    [rawReads] => 790005974
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830371
                    [enaRun] => ERR11423063
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 35
                    [wgsID] => 1
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-07 10:57:00
                    [dateCompleted] => 2023-07-08 04:42:00
                    [bamMd5] => 43943c6a21e27b0414adff1cd5f6645f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 694279138
                    [primaryReads] => 
                    [mappedReads] => 693412569
                    [primaryMapped] => 
                    [pairedReads] => 675920874
                    [meanInsertSize] => 364.73
                    [meanReadDepth] => 34.36
                    [variantsCalled] => 6769656
                    [variantsFiltered] => 6408668
                    [snpCount] => 4514061
                    [snpHom] => 1634826
                    [snpHet] => 2879235
                    [indelCount] => 1906910
                    [insHom] => 260683
                    [delHom] => 374060
                    [insHet] => 591937
                    [delHet] => 726974
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659498
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659498/MHD_34771-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242