Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190099
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 226
[wgsID] => 298
[fwdFile] => MLHD_25106_R1.fastq.gz
[fwdMd5] => 33eef42af3224d1fc203c540a6981a95
[revFile] => MLHD_25106_R2.fastq.gz
[revMd5] => 33e668f9d93cac0f24444683dd4b09ce
[rawReads] => 883403338
[FastqRCS] => 1
[enaExperiment] => ERX10664695
[enaRun] => ERR11256486
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 175
[wgsID] => 298
[refGenome] => cf4
[dateSubmitted] => 2022-10-13 16:28:00
[dateCompleted] => 2022-10-14 11:19:00
[bamMd5] => c1e00f6219186b5799f56130f6a6405b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 888130399
[primaryReads] =>
[mappedReads] => 793474338
[primaryMapped] =>
[pairedReads] => 775040636
[meanInsertSize] => 478.57
[meanReadDepth] => 39.76
[variantsCalled] => 6237958
[variantsFiltered] => 5865622
[snpCount] => 4096053
[snpHom] => 1940660
[snpHet] => 2155393
[indelCount] => 1779720
[insHom] => 316839
[delHom] => 438508
[insHet] => 479659
[delHet] => 582202
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21616666
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21616666/MLHD_25106-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242