Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190099
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 226
                    [wgsID] => 298
                    [fwdFile] => MLHD_25106_R1.fastq.gz
                    [fwdMd5] => 33eef42af3224d1fc203c540a6981a95
                    [revFile] => MLHD_25106_R2.fastq.gz
                    [revMd5] => 33e668f9d93cac0f24444683dd4b09ce
                    [rawReads] => 883403338
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664695
                    [enaRun] => ERR11256486
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 175
                    [wgsID] => 298
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-13 16:28:00
                    [dateCompleted] => 2022-10-14 11:19:00
                    [bamMd5] => c1e00f6219186b5799f56130f6a6405b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 888130399
                    [primaryReads] => 
                    [mappedReads] => 793474338
                    [primaryMapped] => 
                    [pairedReads] => 775040636
                    [meanInsertSize] => 478.57
                    [meanReadDepth] => 39.76
                    [variantsCalled] => 6237958
                    [variantsFiltered] => 5865622
                    [snpCount] => 4096053
                    [snpHom] => 1940660
                    [snpHet] => 2155393
                    [indelCount] => 1779720
                    [insHom] => 316839
                    [delHom] => 438508
                    [insHet] => 479659
                    [delHet] => 582202
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21616666
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21616666/MLHD_25106-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242