Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790766
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 769
[wgsID] => 473
[fwdFile] => MSHD_20665_R1.fastq.gz
[fwdMd5] => 911a4a6ac3fe367b0ae194ccc45e5d3b
[revFile] => MSHD_20665_R2.fastq.gz
[revMd5] => 894133cb2ed7f08122f25646e38f9363
[rawReads] => 1011409468
[FastqRCS] => 1
[enaExperiment] => ERX13028963
[enaRun] => ERR13658261
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1676
[wgsID] => 473
[refGenome] => cf4
[dateSubmitted] => 2024-08-22 16:13:25
[dateCompleted] => 2024-08-23 14:53:02
[bamMd5] => 599cf13b324342aeaaaee61f178c2d9b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 979901518
[primaryReads] => 964104148
[mappedReads] => 977620879
[primaryMapped] => 961823509
[pairedReads] => 939608212
[meanInsertSize] => 343.77
[meanReadDepth] => 42.53
[variantsCalled] => 6412860
[variantsFiltered] => 6084538
[snpCount] => 4324739
[snpHom] => 1750248
[snpHet] => 2574491
[indelCount] => 1770134
[insHom] => 310082
[delHom] => 424250
[insHet] => 482172
[delHet] => 591781
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876967
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876967/MSHD_20665-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242