Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790767
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 772
[wgsID] => 474
[fwdFile] => MSHD_20767_R1.fastq.gz
[fwdMd5] => 6331397577fb25a50084e55443a44805
[revFile] => MSHD_20767_R2.fastq.gz
[revMd5] => cbe0815ecd8bc8b0a943fb25153f054a
[rawReads] => 880061784
[FastqRCS] => 1
[enaExperiment] => ERX13028964
[enaRun] => ERR13658262
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1677
[wgsID] => 474
[refGenome] => cf4
[dateSubmitted] => 2024-08-22 16:13:53
[dateCompleted] => 2024-08-23 12:15:21
[bamMd5] => 609e1f59b0b7941b0ca85a8154b04df2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 818466258
[primaryReads] => 802622398
[mappedReads] => 816374811
[primaryMapped] => 800530951
[pairedReads] => 780007842
[meanInsertSize] => 334.46
[meanReadDepth] => 36.07
[variantsCalled] => 6258379
[variantsFiltered] => 5984183
[snpCount] => 4266744
[snpHom] => 1791425
[snpHet] => 2475319
[indelCount] => 1726837
[insHom] => 316390
[delHom] => 433154
[insHet] => 453384
[delHet] => 558114
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876968
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876968/MSHD_20767-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242