Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790767
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 772
                    [wgsID] => 474
                    [fwdFile] => MSHD_20767_R1.fastq.gz
                    [fwdMd5] => 6331397577fb25a50084e55443a44805
                    [revFile] => MSHD_20767_R2.fastq.gz
                    [revMd5] => cbe0815ecd8bc8b0a943fb25153f054a
                    [rawReads] => 880061784
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028964
                    [enaRun] => ERR13658262
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1677
                    [wgsID] => 474
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-22 16:13:53
                    [dateCompleted] => 2024-08-23 12:15:21
                    [bamMd5] => 609e1f59b0b7941b0ca85a8154b04df2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 818466258
                    [primaryReads] => 802622398
                    [mappedReads] => 816374811
                    [primaryMapped] => 800530951
                    [pairedReads] => 780007842
                    [meanInsertSize] => 334.46
                    [meanReadDepth] => 36.07
                    [variantsCalled] => 6258379
                    [variantsFiltered] => 5984183
                    [snpCount] => 4266744
                    [snpHom] => 1791425
                    [snpHet] => 2475319
                    [indelCount] => 1726837
                    [insHom] => 316390
                    [delHom] => 433154
                    [insHet] => 453384
                    [delHet] => 558114
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876968
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876968/MSHD_20767-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242