Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790759
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 753
                    [wgsID] => 462
                    [fwdFile] => MSHD_22392_R1.fastq.gz
                    [fwdMd5] => bb4a41a2a7a31415a414666d866a4fb7
                    [revFile] => MSHD_22392_R2.fastq.gz
                    [revMd5] => e7fea31e0f00287d05daec4f114925c0
                    [rawReads] => 845321538
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028965
                    [enaRun] => ERR13658263
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1678
                    [wgsID] => 462
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-22 16:14:38
                    [dateCompleted] => 2024-08-23 12:43:02
                    [bamMd5] => d528d8306afdd2382bbf030c45098388
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 657872449
                    [primaryReads] => 646386170
                    [mappedReads] => 655476933
                    [primaryMapped] => 643990654
                    [pairedReads] => 626814708
                    [meanInsertSize] => 333.81
                    [meanReadDepth] => 28.48
                    [variantsCalled] => 5941566
                    [variantsFiltered] => 5687340
                    [snpCount] => 4048505
                    [snpHom] => 1959905
                    [snpHet] => 2088600
                    [indelCount] => 1646541
                    [insHom] => 356342
                    [delHom] => 481355
                    [insHet] => 374111
                    [delHet] => 462107
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876969
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876969/MSHD_22392-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242