Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790760
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 754
[wgsID] => 463
[fwdFile] => MSHD_24315_R1.fastq.gz
[fwdMd5] => 28c349368170fb8108fa49cf91dbe505
[revFile] => MSHD_24315_R2.fastq.gz
[revMd5] => 8259dbe5fa49d1fe4b2be7e439f5f13c
[rawReads] => 935315452
[FastqRCS] => 1
[enaExperiment] => ERX13028966
[enaRun] => ERR13658264
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1679
[wgsID] => 463
[refGenome] => cf4
[dateSubmitted] => 2024-08-28 12:14:20
[dateCompleted] => 2024-08-29 12:41:35
[bamMd5] => fbd4b92dcf2eebbdacf22d7d48aca959
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 640739570
[primaryReads] => 629158924
[mappedReads] => 637356966
[primaryMapped] => 625776320
[pairedReads] => 606492948
[meanInsertSize] => 338.55
[meanReadDepth] => 26.82
[variantsCalled] => 6105743
[variantsFiltered] => 5838021
[snpCount] => 4182348
[snpHom] => 1867221
[snpHet] => 2315127
[indelCount] => 1663662
[insHom] => 333488
[delHom] => 453389
[insHet] => 403745
[delHet] => 501225
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876970
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876970/MSHD_24315-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242