Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190106
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 274
                    [wgsID] => 85
                    [fwdFile] => ACS_34278_R1.fastq.gz
                    [fwdMd5] => 92ac56bd49e2a5fe7a817a73152a1764
                    [revFile] => ACS_34278_R2.fastq.gz
                    [revMd5] => c08b5631064b5eb11382c14d3422c501
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648184
                    [enaRun] => ERR11223855
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 58
                    [wgsID] => 85
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-10 20:49:00
                    [dateCompleted] => 2022-10-11 13:54:00
                    [bamMd5] => f9650055c62cae95dc505ea8d1fbc606
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 974801476
                    [primaryReads] => 
                    [mappedReads] => 967791170
                    [primaryMapped] => 
                    [pairedReads] => 946101496
                    [meanInsertSize] => 424.91
                    [meanReadDepth] => 37.83
                    [variantsCalled] => 6170504
                    [variantsFiltered] => 5820166
                    [snpCount] => 4040626
                    [snpHom] => 2019524
                    [snpHet] => 2021102
                    [indelCount] => 1789737
                    [insHom] => 314024
                    [delHom] => 440043
                    [insHet] => 481919
                    [delHet] => 589834
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775552
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775552/ACS_34278-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242