Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790761
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 780
                    [wgsID] => 464
                    [fwdFile] => MSHD_24618_R1.fastq.gz
                    [fwdMd5] => 5d75a9da1f54b563aef14bd1c9af0167
                    [revFile] => MSHD_24618_R2.fastq.gz
                    [revMd5] => e2867cf89f29fb2e9ae119ea874737ee
                    [rawReads] => 900912794
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028967
                    [enaRun] => ERR13658265
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1680
                    [wgsID] => 464
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-28 12:14:58
                    [dateCompleted] => 2024-08-29 12:41:51
                    [bamMd5] => 8d847290f0f40b019fdee622b4b1b0a2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 563949903
                    [primaryReads] => 554950380
                    [mappedReads] => 560691564
                    [primaryMapped] => 551692041
                    [pairedReads] => 533684452
                    [meanInsertSize] => 345.38
                    [meanReadDepth] => 24.66
                    [variantsCalled] => 5542450
                    [variantsFiltered] => 5310513
                    [snpCount] => 3795883
                    [snpHom] => 2205635
                    [snpHet] => 1590248
                    [indelCount] => 1519883
                    [insHom] => 397324
                    [delHom] => 530353
                    [insHet] => 271235
                    [delHet] => 338635
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876971
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876971/MSHD_24618-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242