Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790761
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 780
[wgsID] => 464
[fwdFile] => MSHD_24618_R1.fastq.gz
[fwdMd5] => 5d75a9da1f54b563aef14bd1c9af0167
[revFile] => MSHD_24618_R2.fastq.gz
[revMd5] => e2867cf89f29fb2e9ae119ea874737ee
[rawReads] => 900912794
[FastqRCS] => 1
[enaExperiment] => ERX13028967
[enaRun] => ERR13658265
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1680
[wgsID] => 464
[refGenome] => cf4
[dateSubmitted] => 2024-08-28 12:14:58
[dateCompleted] => 2024-08-29 12:41:51
[bamMd5] => 8d847290f0f40b019fdee622b4b1b0a2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 563949903
[primaryReads] => 554950380
[mappedReads] => 560691564
[primaryMapped] => 551692041
[pairedReads] => 533684452
[meanInsertSize] => 345.38
[meanReadDepth] => 24.66
[variantsCalled] => 5542450
[variantsFiltered] => 5310513
[snpCount] => 3795883
[snpHom] => 2205635
[snpHet] => 1590248
[indelCount] => 1519883
[insHom] => 397324
[delHom] => 530353
[insHet] => 271235
[delHet] => 338635
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876971
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876971/MSHD_24618-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242