Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790762
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 756
[wgsID] => 465
[fwdFile] => MSHD_24766_R1.fastq.gz
[fwdMd5] => 402bc8fef3d4a350972f291090f6b868
[revFile] => MSHD_24766_R2.fastq.gz
[revMd5] => 2d0318f4a52aac941f738ef39eb3dede
[rawReads] => 944747064
[FastqRCS] => 1
[enaExperiment] => ERX13028968
[enaRun] => ERR13658266
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1681
[wgsID] => 465
[refGenome] => cf4
[dateSubmitted] => 2024-08-28 12:15:32
[dateCompleted] => 2024-08-29 15:09:51
[bamMd5] => 112a41d59b3abb545edcee1c0446a9d8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 662994296
[primaryReads] => 651714666
[mappedReads] => 659304433
[primaryMapped] => 648024803
[pairedReads] => 627405552
[meanInsertSize] => 353.76
[meanReadDepth] => 29.37
[variantsCalled] => 5992823
[variantsFiltered] => 5738160
[snpCount] => 4098998
[snpHom] => 1890830
[snpHet] => 2208168
[indelCount] => 1647065
[insHom] => 339863
[delHom] => 459831
[insHet] => 390533
[delHet] => 484614
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876972
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876972/MSHD_24766-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242