Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790763
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 786
                    [wgsID] => 466
                    [fwdFile] => MSHD_24966_R1.fastq.gz
                    [fwdMd5] => dd41d9ce44b687e29e3446867e2133ce
                    [revFile] => MSHD_24966_R2.fastq.gz
                    [revMd5] => 7c19534441dbe0290deb61e7ca7b21e9
                    [rawReads] => 1379943646
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028969
                    [enaRun] => ERR13658267
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1682
                    [wgsID] => 466
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-28 12:17:02
                    [dateCompleted] => 2024-08-30 03:42:23
                    [bamMd5] => 8d864f3ae823ac50fa08f7796df9f5d2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1374432841
                    [primaryReads] => 1356508618
                    [mappedReads] => 1371159965
                    [primaryMapped] => 1353235742
                    [pairedReads] => 1322199764
                    [meanInsertSize] => 359.05
                    [meanReadDepth] => 61.48
                    [variantsCalled] => 6604778
                    [variantsFiltered] => 6275395
                    [snpCount] => 4443597
                    [snpHom] => 1691899
                    [snpHet] => 2751698
                    [indelCount] => 1843474
                    [insHom] => 295991
                    [delHom] => 408126
                    [insHet] => 534798
                    [delHet] => 648717
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876973
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876973/MSHD_24966-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242