Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790763
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 786
[wgsID] => 466
[fwdFile] => MSHD_24966_R1.fastq.gz
[fwdMd5] => dd41d9ce44b687e29e3446867e2133ce
[revFile] => MSHD_24966_R2.fastq.gz
[revMd5] => 7c19534441dbe0290deb61e7ca7b21e9
[rawReads] => 1379943646
[FastqRCS] => 1
[enaExperiment] => ERX13028969
[enaRun] => ERR13658267
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1682
[wgsID] => 466
[refGenome] => cf4
[dateSubmitted] => 2024-08-28 12:17:02
[dateCompleted] => 2024-08-30 03:42:23
[bamMd5] => 8d864f3ae823ac50fa08f7796df9f5d2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1374432841
[primaryReads] => 1356508618
[mappedReads] => 1371159965
[primaryMapped] => 1353235742
[pairedReads] => 1322199764
[meanInsertSize] => 359.05
[meanReadDepth] => 61.48
[variantsCalled] => 6604778
[variantsFiltered] => 6275395
[snpCount] => 4443597
[snpHom] => 1691899
[snpHet] => 2751698
[indelCount] => 1843474
[insHom] => 295991
[delHom] => 408126
[insHet] => 534798
[delHet] => 648717
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876973
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876973/MSHD_24966-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242