Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790764
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 758
[wgsID] => 467
[fwdFile] => MSHD_24967_R1.fastq.gz
[fwdMd5] => c3c936189087701bfc1a5ef3340ab62c
[revFile] => MSHD_24967_R2.fastq.gz
[revMd5] => e3bf91f67e201196818639f14b9cfa47
[rawReads] => 992308232
[FastqRCS] => 1
[enaExperiment] => ERX13028970
[enaRun] => ERR13658268
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1683
[wgsID] => 467
[refGenome] => cf4
[dateSubmitted] => 2024-08-28 12:17:28
[dateCompleted] => 2024-08-29 18:33:47
[bamMd5] => 40ffad5149861d2680260f777d189cf1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 963200197
[primaryReads] => 949143876
[mappedReads] => 960926929
[primaryMapped] => 946870608
[pairedReads] => 925475782
[meanInsertSize] => 348.27
[meanReadDepth] => 43.15
[variantsCalled] => 6128153
[variantsFiltered] => 5824645
[snpCount] => 4132269
[snpHom] => 1954680
[snpHet] => 2177589
[indelCount] => 1701192
[insHom] => 352187
[delHom] => 473518
[insHet] => 407373
[delHet] => 499555
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876974
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876974/MSHD_24967-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242