Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790768
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 793
[wgsID] => 481
[fwdFile] => MSHD_24973_R1.fastq.gz
[fwdMd5] => 48aeebd7e16c3deb328cae914a6134ea
[revFile] => MSHD_24973_R2.fastq.gz
[revMd5] => e2ff6b64bc8d4ff45bea90ae1a414b19
[rawReads] => 1205363978
[FastqRCS] => 1
[enaExperiment] => ERX13028971
[enaRun] => ERR13658269
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1685
[wgsID] => 481
[refGenome] => cf4
[dateSubmitted] => 2024-08-29 16:02:38
[dateCompleted] => 2024-08-31 01:34:28
[bamMd5] => 3ed77a6b864e4fa187701a6c54a17412
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 905700820
[primaryReads] => 892918851
[mappedReads] => 901646114
[primaryMapped] => 888864145
[pairedReads] => 864892690
[meanInsertSize] => 347.86
[meanReadDepth] => 38.63
[variantsCalled] => 6178623
[variantsFiltered] => 5885092
[snpCount] => 4181176
[snpHom] => 1883976
[snpHet] => 2297200
[indelCount] => 1712940
[insHom] => 336105
[delHom] => 455580
[insHet] => 428492
[delHet] => 525469
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876975
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876975/MSHD_24973-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242