Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790768
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 793
                    [wgsID] => 481
                    [fwdFile] => MSHD_24973_R1.fastq.gz
                    [fwdMd5] => 48aeebd7e16c3deb328cae914a6134ea
                    [revFile] => MSHD_24973_R2.fastq.gz
                    [revMd5] => e2ff6b64bc8d4ff45bea90ae1a414b19
                    [rawReads] => 1205363978
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028971
                    [enaRun] => ERR13658269
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1685
                    [wgsID] => 481
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-29 16:02:38
                    [dateCompleted] => 2024-08-31 01:34:28
                    [bamMd5] => 3ed77a6b864e4fa187701a6c54a17412
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 905700820
                    [primaryReads] => 892918851
                    [mappedReads] => 901646114
                    [primaryMapped] => 888864145
                    [pairedReads] => 864892690
                    [meanInsertSize] => 347.86
                    [meanReadDepth] => 38.63
                    [variantsCalled] => 6178623
                    [variantsFiltered] => 5885092
                    [snpCount] => 4181176
                    [snpHom] => 1883976
                    [snpHet] => 2297200
                    [indelCount] => 1712940
                    [insHom] => 336105
                    [delHom] => 455580
                    [insHet] => 428492
                    [delHet] => 525469
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876975
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876975/MSHD_24973-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242