Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790769
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 796
[wgsID] => 482
[fwdFile] => MSHD_25005_R1.fastq.gz
[fwdMd5] => a9367b6a79eabd7bfb091fc36ad012e6
[revFile] => MSHD_25005_R2.fastq.gz
[revMd5] => dc6cefb545f7ae1194d01731d7eb95f2
[rawReads] => 939676110
[FastqRCS] => 1
[enaExperiment] => ERX13028972
[enaRun] => ERR13658270
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1684
[wgsID] => 482
[refGenome] => cf4
[dateSubmitted] => 2024-08-29 16:04:06
[dateCompleted] => 2024-08-30 09:29:42
[bamMd5] => 56172ed1cc0dd13f22843278359ae90f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 787058034
[primaryReads] => 777039929
[mappedReads] => 784275560
[primaryMapped] => 774257455
[pairedReads] => 755218776
[meanInsertSize] => 356.14
[meanReadDepth] => 34.70
[variantsCalled] => 6156121
[variantsFiltered] => 5884322
[snpCount] => 4205879
[snpHom] => 1820724
[snpHet] => 2385155
[indelCount] => 1687244
[insHom] => 322581
[delHom] => 439320
[insHet] => 428413
[delHet] => 528176
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876976
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876976/MSHD_25005-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242