Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721107
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 606
[wgsID] => 359
[fwdFile] => MSHD_39470_R1.fastq.gz
[fwdMd5] => e49020c9cd58d35797290d24ce0819b2
[revFile] => MSHD_39470_R2.fastq.gz
[revMd5] => a67a7aff6b0958190788801e1a97e525
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632445
[enaRun] => ERR11203061
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 825
[wgsID] => 359
[refGenome] => cf4
[dateSubmitted] => 2023-05-19 10:56:00
[dateCompleted] => 2023-05-20 04:13:00
[bamMd5] => b496c67b843eb6ecd9d954fbc991a956
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 951447744
[primaryReads] =>
[mappedReads] => 950268174
[primaryMapped] =>
[pairedReads] => 924995096
[meanInsertSize] => 404.08
[meanReadDepth] => 46.96
[variantsCalled] => 6960567
[variantsFiltered] => 6538871
[snpCount] => 4596795
[snpHom] => 1584345
[snpHet] => 3012450
[indelCount] => 1955769
[insHom] => 247519
[delHom] => 353547
[insHet] => 636370
[delHet] => 770508
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817143
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817143/MSHD_39470-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242