Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721131
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 623
[wgsID] => 383
[fwdFile] => MSHD_40433_R1.fastq.gz
[fwdMd5] => eb1eaf7c1c79baa6521b831313f66958
[revFile] => MSHD_40433_R2.fastq.gz
[revMd5] => 90d0ae9d883f858301d5732331537cba
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632462
[enaRun] => ERR11203078
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 842
[wgsID] => 383
[refGenome] => cf4
[dateSubmitted] => 2023-05-19 10:59:00
[dateCompleted] => 2023-05-19 21:02:00
[bamMd5] => 9e3f653f9f2e15a29c42c3b6efa4269f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 367731043
[primaryReads] =>
[mappedReads] => 366637866
[primaryMapped] =>
[pairedReads] => 351533644
[meanInsertSize] => 296.70
[meanReadDepth] => 15.79
[variantsCalled] => 6457013
[variantsFiltered] => 6197856
[snpCount] => 4402367
[snpHom] => 1653666
[snpHet] => 2748701
[indelCount] => 1805297
[insHom] => 268903
[delHom] => 386426
[insHet] => 520003
[delHet] => 663976
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817147
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817147/MSHD_40433-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242