Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790776
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 806
                    [wgsID] => 489
                    [fwdFile] => MSHD_41226_R1.fastq.gz
                    [fwdMd5] => d72f6b6bea7d5feadfe28e5f6bab80d6
                    [revFile] => MSHD_41226_R2.fastq.gz
                    [revMd5] => 89410f6e31add19a55a68909f6062d8d
                    [rawReads] => 910534508
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028976
                    [enaRun] => ERR13658274
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1688
                    [wgsID] => 489
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-30 11:30:17
                    [dateCompleted] => 2024-09-01 10:48:30
                    [bamMd5] => 5a5cb756e8e6b782fbd4b0583debc203
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 892956731
                    [primaryReads] => 876714530
                    [mappedReads] => 890978460
                    [primaryMapped] => 874736259
                    [pairedReads] => 854592838
                    [meanInsertSize] => 327.98
                    [meanReadDepth] => 37.83
                    [variantsCalled] => 6215085
                    [variantsFiltered] => 5916180
                    [snpCount] => 4206192
                    [snpHom] => 1850321
                    [snpHet] => 2355871
                    [indelCount] => 1719258
                    [insHom] => 330945
                    [delHom] => 448488
                    [insHet] => 436360
                    [delHet] => 537004
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876980
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876980/MSHD_41226-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242