Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790775
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 805
[wgsID] => 488
[fwdFile] => MSHD_41233_R1.fastq.gz
[fwdMd5] => a83911d603c04d8cfd371dd140262a1c
[revFile] => MSHD_41233_R2.fastq.gz
[revMd5] => f618c3ddbaa1e4d3c5d4a83435d3f32b
[rawReads] => 1075236120
[FastqRCS] => 1
[enaExperiment] => ERX13028977
[enaRun] => ERR13658275
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1694
[wgsID] => 488
[refGenome] => cf4
[dateSubmitted] => 2024-09-13 11:41:48
[dateCompleted] => 2024-09-14 16:24:33
[bamMd5] => 8da2fa285a7aae370ed01f02896e616b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 943302222
[primaryReads] => 929024998
[mappedReads] => 940291906
[primaryMapped] => 926014682
[pairedReads] => 902370530
[meanInsertSize] => 351.57
[meanReadDepth] => 40.61
[variantsCalled] => 6352653
[variantsFiltered] => 6049138
[snpCount] => 4292873
[snpHom] => 1777803
[snpHet] => 2515070
[indelCount] => 1766282
[insHom] => 314993
[delHom] => 430479
[insHet] => 475880
[delHet] => 582849
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876981
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876981/MSHD_41233-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242