Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790778
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 808
                    [wgsID] => 491
                    [fwdFile] => MSHD_41235_R1.fastq.gz
                    [fwdMd5] => ade41f9985dd803b5d67af58168f1d6d
                    [revFile] => MSHD_41235_R2.fastq.gz
                    [revMd5] => 724e9fde708abf93c82539e59bc48983
                    [rawReads] => 934211560
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028978
                    [enaRun] => ERR13658276
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1689
                    [wgsID] => 491
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-30 11:31:13
                    [dateCompleted] => 2024-09-01 11:04:31
                    [bamMd5] => ce5df56f0ebddf3e4bca2dc04245a2ca
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 742958228
                    [primaryReads] => 732052850
                    [mappedReads] => 739774183
                    [primaryMapped] => 728868805
                    [pairedReads] => 708981680
                    [meanInsertSize] => 356.85
                    [meanReadDepth] => 32.92
                    [variantsCalled] => 6056511
                    [variantsFiltered] => 5788894
                    [snpCount] => 4137003
                    [snpHom] => 1910204
                    [snpHet] => 2226799
                    [indelCount] => 1659628
                    [insHom] => 344308
                    [delHom] => 463065
                    [insHet] => 392939
                    [delHet] => 488180
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876982
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876982/MSHD_41235-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242