Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790771
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 801
[wgsID] => 484
[fwdFile] => MSHD_41238_R1.fastq.gz
[fwdMd5] => 171575836a6fcb335fd76cd5046f376f
[revFile] => MSHD_41238_R2.fastq.gz
[revMd5] => 32bf5a4ae3ba5be0735d36554e7178cf
[rawReads] => 1053224888
[FastqRCS] => 1
[enaExperiment] => ERX13028979
[enaRun] => ERR13658277
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1690
[wgsID] => 484
[refGenome] => cf4
[dateSubmitted] => 2024-09-12 11:11:17
[dateCompleted] => 2024-09-13 08:55:26
[bamMd5] => f9567883fc3c2970ba6109bff85ba811
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 779325504
[primaryReads] => 763434027
[mappedReads] => 775401431
[primaryMapped] => 759509954
[pairedReads] => 733518860
[meanInsertSize] => 339.01
[meanReadDepth] => 33.92
[variantsCalled] => 6250577
[variantsFiltered] => 5967773
[snpCount] => 4265412
[snpHom] => 1779044
[snpHet] => 2486368
[indelCount] => 1711330
[insHom] => 318338
[delHom] => 435619
[insHet] => 442462
[delHet] => 547398
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876983
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876983/MSHD_41238-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242