Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790771
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 801
                    [wgsID] => 484
                    [fwdFile] => MSHD_41238_R1.fastq.gz
                    [fwdMd5] => 171575836a6fcb335fd76cd5046f376f
                    [revFile] => MSHD_41238_R2.fastq.gz
                    [revMd5] => 32bf5a4ae3ba5be0735d36554e7178cf
                    [rawReads] => 1053224888
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028979
                    [enaRun] => ERR13658277
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1690
                    [wgsID] => 484
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-12 11:11:17
                    [dateCompleted] => 2024-09-13 08:55:26
                    [bamMd5] => f9567883fc3c2970ba6109bff85ba811
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 779325504
                    [primaryReads] => 763434027
                    [mappedReads] => 775401431
                    [primaryMapped] => 759509954
                    [pairedReads] => 733518860
                    [meanInsertSize] => 339.01
                    [meanReadDepth] => 33.92
                    [variantsCalled] => 6250577
                    [variantsFiltered] => 5967773
                    [snpCount] => 4265412
                    [snpHom] => 1779044
                    [snpHet] => 2486368
                    [indelCount] => 1711330
                    [insHom] => 318338
                    [delHom] => 435619
                    [insHet] => 442462
                    [delHet] => 547398
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876983
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876983/MSHD_41238-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242