Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790774
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 804
[wgsID] => 487
[fwdFile] => MSHD_41240_R1.fastq.gz
[fwdMd5] => d76d5eef161b1d78d7fed423cc5927e8
[revFile] => MSHD_41240_R2.fastq.gz
[revMd5] => 58c7f6cc45099bef2ce7d50036db32bc
[rawReads] => 873289698
[FastqRCS] => 1
[enaExperiment] => ERX13028980
[enaRun] => ERR13658278
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1691
[wgsID] => 487
[refGenome] => cf4
[dateSubmitted] => 2024-09-12 11:11:52
[dateCompleted] => 2024-09-13 08:01:09
[bamMd5] => 605a0703009ebeaac68018c87072da44
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 829176696
[primaryReads] => 817943382
[mappedReads] => 827106079
[primaryMapped] => 815872765
[pairedReads] => 796486616
[meanInsertSize] => 367.93
[meanReadDepth] => 37.00
[variantsCalled] => 6230463
[variantsFiltered] => 5932292
[snpCount] => 4223281
[snpHom] => 1795462
[snpHet] => 2427819
[indelCount] => 1718180
[insHom] => 318507
[delHom] => 434811
[insHet] => 447472
[delHet] => 551039
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876984
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876984/MSHD_41240-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242