Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790780
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 810
                    [wgsID] => 493
                    [fwdFile] => MSHD_41246_R1.fastq.gz
                    [fwdMd5] => d7e1065989b923ff4eaa7ff7e21af1ce
                    [revFile] => MSHD_41246_R2.fastq.gz
                    [revMd5] => 88f0ca9ce249810387f7300e2c8ab112
                    [rawReads] => 886819954
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028982
                    [enaRun] => ERR13658280
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1693
                    [wgsID] => 493
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-12 11:23:09
                    [dateCompleted] => 2024-09-13 08:12:38
                    [bamMd5] => 9e8c415e645bd7bf6a32dc25b1762dd0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 723379831
                    [primaryReads] => 711380760
                    [mappedReads] => 720847992
                    [primaryMapped] => 708848921
                    [pairedReads] => 690139670
                    [meanInsertSize] => 347.91
                    [meanReadDepth] => 32.69
                    [variantsCalled] => 5977682
                    [variantsFiltered] => 5726470
                    [snpCount] => 4077923
                    [snpHom] => 1955876
                    [snpHet] => 2122047
                    [indelCount] => 1656187
                    [insHom] => 350005
                    [delHom] => 472483
                    [insHet] => 385431
                    [delHet] => 476542
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876986
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876986/MSHD_41246-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242