Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790777
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 807
[wgsID] => 490
[fwdFile] => MSHD_41251_R1.fastq.gz
[fwdMd5] => 9caf1475694dac5cde70e7cab87b465c
[revFile] => MSHD_41251_R2.fastq.gz
[revMd5] => c20e018ad98ceb19f72d46154825cc80
[rawReads] => 1052973990
[FastqRCS] => 1
[enaExperiment] => ERX13028983
[enaRun] => ERR13658281
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1695
[wgsID] => 490
[refGenome] => cf4
[dateSubmitted] => 2024-09-13 11:38:44
[dateCompleted] => 2024-09-14 12:28:28
[bamMd5] => 69da2f9ed6947b4b2976682e8d2fa831
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 943910812
[primaryReads] => 930081771
[mappedReads] => 941116363
[primaryMapped] => 927287322
[pairedReads] => 904914382
[meanInsertSize] => 349.98
[meanReadDepth] => 41.17
[variantsCalled] => 6248360
[variantsFiltered] => 5944926
[snpCount] => 4224381
[snpHom] => 1844077
[snpHet] => 2380304
[indelCount] => 1729886
[insHom] => 331178
[delHom] => 448454
[insHet] => 442075
[delHet] => 542709
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876987
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876987/MSHD_41251-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242