Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790781
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 811
[wgsID] => 494
[fwdFile] => MSHD_41252_R1.fastq.gz
[fwdMd5] => 87d796ac4c695d7916368ee08bee3c6f
[revFile] => MSHD_41252_R2.fastq.gz
[revMd5] => 67149117784d592c624aade91fa98ce8
[rawReads] => 966784330
[FastqRCS] => 1
[enaExperiment] => ERX13028984
[enaRun] => ERR13658282
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1696
[wgsID] => 494
[refGenome] => cf4
[dateSubmitted] => 2024-09-13 11:39:21
[dateCompleted] => 2024-09-14 11:40:14
[bamMd5] => 79a8892121561a6b3f89e8b4a7a0f9c4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 872772062
[primaryReads] => 859735582
[mappedReads] => 870112787
[primaryMapped] => 857076307
[pairedReads] => 835276308
[meanInsertSize] => 360.30
[meanReadDepth] => 37.88
[variantsCalled] => 6225880
[variantsFiltered] => 5941962
[snpCount] => 4219006
[snpHom] => 1829992
[snpHet] => 2389014
[indelCount] => 1732064
[insHom] => 326766
[delHom] => 446525
[insHet] => 446192
[delHet] => 546666
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876988
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876988/MSHD_41252-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242