Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790781
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 811
                    [wgsID] => 494
                    [fwdFile] => MSHD_41252_R1.fastq.gz
                    [fwdMd5] => 87d796ac4c695d7916368ee08bee3c6f
                    [revFile] => MSHD_41252_R2.fastq.gz
                    [revMd5] => 67149117784d592c624aade91fa98ce8
                    [rawReads] => 966784330
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028984
                    [enaRun] => ERR13658282
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1696
                    [wgsID] => 494
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-13 11:39:21
                    [dateCompleted] => 2024-09-14 11:40:14
                    [bamMd5] => 79a8892121561a6b3f89e8b4a7a0f9c4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 872772062
                    [primaryReads] => 859735582
                    [mappedReads] => 870112787
                    [primaryMapped] => 857076307
                    [pairedReads] => 835276308
                    [meanInsertSize] => 360.30
                    [meanReadDepth] => 37.88
                    [variantsCalled] => 6225880
                    [variantsFiltered] => 5941962
                    [snpCount] => 4219006
                    [snpHom] => 1829992
                    [snpHet] => 2389014
                    [indelCount] => 1732064
                    [insHom] => 326766
                    [delHom] => 446525
                    [insHet] => 446192
                    [delHet] => 546666
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876988
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876988/MSHD_41252-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242