Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790783
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 813
                    [wgsID] => 496
                    [fwdFile] => MSHD_41318_R1.fastq.gz
                    [fwdMd5] => 0bc3e7465be565faccfdf47c6544871f
                    [revFile] => MSHD_41318_R2.fastq.gz
                    [revMd5] => 1d39c7e5c6bfac4e1e9f0e046423c3aa
                    [rawReads] => 904275796
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028986
                    [enaRun] => ERR13658284
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1698
                    [wgsID] => 496
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-13 11:40:20
                    [dateCompleted] => 2024-09-14 13:38:58
                    [bamMd5] => a15fb6478d615735c61037f4d4c1ded6
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 690274419
                    [primaryReads] => 674644622
                    [mappedReads] => 687490023
                    [primaryMapped] => 671860226
                    [pairedReads] => 650910126
                    [meanInsertSize] => 325.96
                    [meanReadDepth] => 29.89
                    [variantsCalled] => 5884687
                    [variantsFiltered] => 5626408
                    [snpCount] => 4010808
                    [snpHom] => 2040538
                    [snpHet] => 1970270
                    [indelCount] => 1622532
                    [insHom] => 369306
                    [delHom] => 496947
                    [insHet] => 349724
                    [delHet] => 431130
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876990
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876990/MSHD_41318-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242