Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721135
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 568
[wgsID] => 388
[fwdFile] => MS_22478_R1.fastq.gz
[fwdMd5] => 714d82b217a6971e38b0588cf05be268
[revFile] => MS_22478_R2.fastq.gz
[revMd5] => 0a141a6cf3c108d7260e03959e97aa9f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632407
[enaRun] => ERR11203023
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 787
[wgsID] => 388
[refGenome] => cf4
[dateSubmitted] => 2023-05-16 15:25:00
[dateCompleted] => 2023-05-17 05:03:00
[bamMd5] => 2858e401e23704cc923a30717f0b3cb2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 659070141
[primaryReads] =>
[mappedReads] => 658185921
[primaryMapped] =>
[pairedReads] => 640498926
[meanInsertSize] => 385.98
[meanReadDepth] => 32.88
[variantsCalled] => 6015689
[variantsFiltered] => 5658350
[snpCount] => 3959536
[snpHom] => 2189057
[snpHet] => 1770479
[indelCount] => 1706746
[insHom] => 369699
[delHom] => 507706
[insHet] => 386940
[delHet] => 469607
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817132
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817132/MS_22478-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242