Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190231
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 102
                    [wgsID] => 196
                    [fwdFile] => AM_20333_R1.fastq.gz
                    [fwdMd5] => e48d8c6d9f322dfb089d8303ee9826bf
                    [revFile] => AM_20333_R2.fastq.gz
                    [revMd5] => 006387fed8fd8ac6f85f4cdab597cf7d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682116
                    [enaRun] => ERR11274546
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 341
                    [wgsID] => 196
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-17 10:36:00
                    [dateCompleted] => 2023-03-19 01:48:00
                    [bamMd5] => fc4f75696a600235635ed7de97d2820b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 964439828
                    [primaryReads] => 
                    [mappedReads] => 962306527
                    [primaryMapped] => 
                    [pairedReads] => 940098820
                    [meanInsertSize] => 473.21
                    [meanReadDepth] => 48.30
                    [variantsCalled] => 7205161
                    [variantsFiltered] => 6750891
                    [snpCount] => 4758449
                    [snpHom] => 2123773
                    [snpHet] => 2634676
                    [indelCount] => 2005591
                    [insHom] => 320151
                    [delHom] => 436755
                    [insHet] => 584017
                    [delHet] => 708856
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375563
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375563/AM_20333-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242