Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721142
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 579
[wgsID] => 395
[fwdFile] => MS_35516_R1.fastq.gz
[fwdMd5] => 6dca8a10131e19be2b1c8f4589a6d8e8
[revFile] => MS_35516_R2.fastq.gz
[revMd5] => 1ed169e6dbec37757bf63a4e0c4d87ab
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632418
[enaRun] => ERR11203034
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 798
[wgsID] => 395
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:56:00
[dateCompleted] => 2023-05-19 01:26:00
[bamMd5] => 3acbe263cee21a9ae93c216fc93e7963
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 535278147
[primaryReads] =>
[mappedReads] => 534452132
[primaryMapped] =>
[pairedReads] => 515957274
[meanInsertSize] => 308.38
[meanReadDepth] => 24.32
[variantsCalled] => 6289029
[variantsFiltered] => 5996582
[snpCount] => 4212899
[snpHom] => 1909256
[snpHet] => 2303643
[indelCount] => 1793318
[insHom] => 311106
[delHom] => 435631
[insHet] => 482931
[delHet] => 598011
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817139
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817139/MS_35516-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242