Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721142
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 579
                    [wgsID] => 395
                    [fwdFile] => MS_35516_R1.fastq.gz
                    [fwdMd5] => 6dca8a10131e19be2b1c8f4589a6d8e8
                    [revFile] => MS_35516_R2.fastq.gz
                    [revMd5] => 1ed169e6dbec37757bf63a4e0c4d87ab
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632418
                    [enaRun] => ERR11203034
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 798
                    [wgsID] => 395
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-18 13:56:00
                    [dateCompleted] => 2023-05-19 01:26:00
                    [bamMd5] => 3acbe263cee21a9ae93c216fc93e7963
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 535278147
                    [primaryReads] => 
                    [mappedReads] => 534452132
                    [primaryMapped] => 
                    [pairedReads] => 515957274
                    [meanInsertSize] => 308.38
                    [meanReadDepth] => 24.32
                    [variantsCalled] => 6289029
                    [variantsFiltered] => 5996582
                    [snpCount] => 4212899
                    [snpHom] => 1909256
                    [snpHet] => 2303643
                    [indelCount] => 1793318
                    [insHom] => 311106
                    [delHom] => 435631
                    [insHet] => 482931
                    [delHet] => 598011
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817139
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817139/MS_35516-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242