Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721144
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 582
[wgsID] => 397
[fwdFile] => MS_36952_R1.fastq.gz
[fwdMd5] => 5d953718b8e0e9789faafeda8650a253
[revFile] => MS_36952_R2.fastq.gz
[revMd5] => 95df869fb53fefbf864fcb63e62e62e4
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632421
[enaRun] => ERR11203037
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 801
[wgsID] => 397
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:56:00
[dateCompleted] => 2023-05-19 01:17:00
[bamMd5] => 4174df6d067be391e3f630ad3632db30
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 680797060
[primaryReads] =>
[mappedReads] => 679995433
[primaryMapped] =>
[pairedReads] => 650230750
[meanInsertSize] => 368.23
[meanReadDepth] => 31.98
[variantsCalled] => 6343565
[variantsFiltered] => 5995161
[snpCount] => 4203826
[snpHom] => 1976093
[snpHet] => 2227733
[indelCount] => 1801209
[insHom] => 325081
[delHom] => 451364
[insHet] => 476018
[delHet] => 584461
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817140
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817140/MS_36952-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242