Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721145
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 584
[wgsID] => 398
[fwdFile] => MS_37437_R1.fastq.gz
[fwdMd5] => 8a66e4ad899636b4ad1166a9d1630edd
[revFile] => MS_37437_R2.fastq.gz
[revMd5] => 11d2453b8abfec87a6b685236e7a41cf
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632423
[enaRun] => ERR11203039
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 803
[wgsID] => 398
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:57:00
[dateCompleted] => 2023-05-19 02:22:00
[bamMd5] => 5dd74de770af0bc180aceecc75957911
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 637539609
[primaryReads] =>
[mappedReads] => 636591133
[primaryMapped] =>
[pairedReads] => 618809946
[meanInsertSize] => 390.54
[meanReadDepth] => 31.50
[variantsCalled] => 5938706
[variantsFiltered] => 5572119
[snpCount] => 3885130
[snpHom] => 2261677
[snpHet] => 1623453
[indelCount] => 1694564
[insHom] => 380557
[delHom] => 523516
[insHet] => 370325
[delHet] => 446204
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817141
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817141/MS_37437-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242