Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721146
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 603
                    [wgsID] => 399
                    [fwdFile] => MS_38709_R1.fastq.gz
                    [fwdMd5] => 0441cb145f57a367074c0057317fdc14
                    [revFile] => MS_38709_R2.fastq.gz
                    [revMd5] => a910beed0ece295314e0a0dfde1b330e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632442
                    [enaRun] => ERR11203058
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 822
                    [wgsID] => 399
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-18 13:57:00
                    [dateCompleted] => 2023-05-19 06:01:00
                    [bamMd5] => d1ed7a50ed21fbcc6715068f583e2091
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 889079049
                    [primaryReads] => 
                    [mappedReads] => 887724084
                    [primaryMapped] => 
                    [pairedReads] => 854824758
                    [meanInsertSize] => 397.65
                    [meanReadDepth] => 42.87
                    [variantsCalled] => 6023941
                    [variantsFiltered] => 5671600
                    [snpCount] => 3955974
                    [snpHom] => 2180409
                    [snpHet] => 1775565
                    [indelCount] => 1724242
                    [insHom] => 361923
                    [delHom] => 496265
                    [insHet] => 405583
                    [delHet] => 490426
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817142
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817142/MS_38709-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242