Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] =>
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 877
[wgsID] => 560
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1106432764
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1753
[wgsID] => 560
[refGenome] => cf4
[dateSubmitted] => 2025-02-05 10:30:08
[dateCompleted] => 2025-02-07 07:54:05
[bamMd5] => 6e6b037dabc815bf88a31f9ba2c0a9b2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 608869339
[primaryReads] => 605444632
[mappedReads] => 608111445
[primaryMapped] => 604686738
[pairedReads] => 599008168
[meanInsertSize] => 360.81
[meanReadDepth] => 18.19
[variantsCalled] => 5761161
[variantsFiltered] => 5502369
[snpCount] => 3855851
[snpHom] => 2265090
[snpHet] => 1590761
[indelCount] => 1653091
[insHom] => 382102
[delHom] => 524668
[insHet] => 343975
[delHet] => 425062
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
