Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN03168378
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 742
[wgsID] => 444
[fwdFile] => SRR2827563_1.fastq.gz
[fwdMd5] =>
[revFile] => SRR2827563_2.fastq.gz
[revMd5] =>
[rawReads] => 395998704
[FastqRCS] => 0
[enaExperiment] => SRX1386865
[enaRun] => SRR2827563
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1649
[wgsID] => 444
[refGenome] => cf4
[dateSubmitted] => 2024-05-15 10:33:35
[dateCompleted] => 2024-05-15 21:04:44
[bamMd5] => 65253ae7ca90b371a9017ae92dea10c1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 395111476
[primaryReads] => 394421624
[mappedReads] => 393249563
[primaryMapped] => 392559711
[pairedReads] => 387054664
[meanInsertSize] => 629.14
[meanReadDepth] => 14.30
[variantsCalled] => 6251144
[variantsFiltered] => 5934752
[snpCount] => 4372389
[snpHom] =>
[snpHet] =>
[indelCount] => 1568841
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
