Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190116
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 229
                    [wgsID] => 75
                    [fwdFile] => MWHD_29814_R1.fastq.gz
                    [fwdMd5] => fe55fb62b3b846d90d8c84cc15e95fcd
                    [revFile] => MWHD_29814_R2.fastq.gz
                    [revMd5] => a10dfd362e4b2f0673bf95d7a462ce95
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648179
                    [enaRun] => ERR11223850
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 68
                    [wgsID] => 75
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-10 09:08:00
                    [dateCompleted] => 2022-10-11 06:16:00
                    [bamMd5] => 13ab0f3769f6117a7f70a9f806c8e6cc
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 993627377
                    [primaryReads] => 
                    [mappedReads] => 732489612
                    [primaryMapped] => 
                    [pairedReads] => 716815042
                    [meanInsertSize] => 437.99
                    [meanReadDepth] => 31.38
                    [variantsCalled] => 6594567
                    [variantsFiltered] => 6247279
                    [snpCount] => 4366128
                    [snpHom] => 1749886
                    [snpHet] => 2616242
                    [indelCount] => 1893350
                    [insHom] => 271942
                    [delHom] => 384401
                    [insHet] => 576837
                    [delHet] => 705324
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775562
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775562/MWHD_29814-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242