Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296824
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 641
                    [wgsID] => 18
                    [fwdFile] => MWHD_36957_R1.fastq.gz
                    [fwdMd5] => a0d9b643fa5fe921416fddfc6363c74a
                    [revFile] => MWHD_36957_R2.fastq.gz
                    [revMd5] => d7cf7aa8817125e294241862fccb90e2
                    [rawReads] => 947140830
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830386
                    [enaRun] => ERR11423078
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 45
                    [wgsID] => 18
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 10:58:00
                    [dateCompleted] => 2023-07-20 08:03:00
                    [bamMd5] => 13801197b35173724a22995986aeac30
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 815263014
                    [primaryReads] => 
                    [mappedReads] => 813953787
                    [primaryMapped] => 
                    [pairedReads] => 793149684
                    [meanInsertSize] => 351.35
                    [meanReadDepth] => 39.24
                    [variantsCalled] => 6713552
                    [variantsFiltered] => 6331986
                    [snpCount] => 4445701
                    [snpHom] => 1683347
                    [snpHet] => 2762354
                    [indelCount] => 1898256
                    [insHom] => 268362
                    [delHom] => 381461
                    [insHet] => 582164
                    [delHet] => 713001
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659499
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659499/MWHD_36957-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242