Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA5818551
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 231
                    [wgsID] => 131
                    [fwdFile] => NB_12485_R1.fastq.gz
                    [fwdMd5] => 85b2c2fd5e48c19aa2d975f76b673f4f
                    [revFile] => NB_12485_R2.fastq.gz
                    [revMd5] => 4da9f792ad2da2243c6eef6e6a4b955e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX3500532
                    [enaRun] => ERR3478973
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 240
                    [wgsID] => 131
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-21 09:08:00
                    [dateCompleted] => 2022-11-22 02:28:00
                    [bamMd5] => 95ce6a9455135b1906bee54029ea2b15
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 931532450
                    [primaryReads] => 
                    [mappedReads] => 918785695
                    [primaryMapped] => 
                    [pairedReads] => 900497538
                    [meanInsertSize] => 468.99
                    [meanReadDepth] => 42.74
                    [variantsCalled] => 6309729
                    [variantsFiltered] => 5920789
                    [snpCount] => 4126025
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1805258
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21783007
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783007/NB_12485-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242