Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190175
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 235
                    [wgsID] => 253
                    [fwdFile] => NSDTR_33313_R1.fastq.gz
                    [fwdMd5] => 7f83156aa377e254d12103514be46857
                    [revFile] => NSDTR_33313_R2.fastq.gz
                    [revMd5] => 0b4b3fb645ef85e16b6e0f77514df686
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677694
                    [enaRun] => ERR11270106
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 262
                    [wgsID] => 253
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-24 12:34:00
                    [dateCompleted] => 2022-11-25 07:37:00
                    [bamMd5] => 6e6d8ba7a88015c5b5f302341a4065cb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 983448919
                    [primaryReads] => 
                    [mappedReads] => 950660767
                    [primaryMapped] => 
                    [pairedReads] => 931939202
                    [meanInsertSize] => 427.00
                    [meanReadDepth] => 41.98
                    [variantsCalled] => 6415573
                    [variantsFiltered] => 6076748
                    [snpCount] => 4262876
                    [snpHom] => 1763315
                    [snpHet] => 2499561
                    [indelCount] => 1824954
                    [insHom] => 282253
                    [delHom] => 394869
                    [insHet] => 533869
                    [delHet] => 655378
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782180
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782180/NSDTR_33313-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242