Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190175
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 235
[wgsID] => 253
[fwdFile] => NSDTR_33313_R1.fastq.gz
[fwdMd5] => 7f83156aa377e254d12103514be46857
[revFile] => NSDTR_33313_R2.fastq.gz
[revMd5] => 0b4b3fb645ef85e16b6e0f77514df686
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677694
[enaRun] => ERR11270106
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 262
[wgsID] => 253
[refGenome] => cf4
[dateSubmitted] => 2022-11-24 12:34:00
[dateCompleted] => 2022-11-25 07:37:00
[bamMd5] => 6e6d8ba7a88015c5b5f302341a4065cb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 983448919
[primaryReads] =>
[mappedReads] => 950660767
[primaryMapped] =>
[pairedReads] => 931939202
[meanInsertSize] => 427.00
[meanReadDepth] => 41.98
[variantsCalled] => 6415573
[variantsFiltered] => 6076748
[snpCount] => 4262876
[snpHom] => 1763315
[snpHet] => 2499561
[indelCount] => 1824954
[insHom] => 282253
[delHom] => 394869
[insHet] => 533869
[delHet] => 655378
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21782180
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782180/NSDTR_33313-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242