Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721111
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 613
[wgsID] => 363
[fwdFile] => NSDTR_39675_R1.fastq.gz
[fwdMd5] => 80963786cd3e08529aad1b2728eed343
[revFile] => NSDTR_39675_R2.fastq.gz
[revMd5] => 4179451b90bf678725886c5c14fd097c
[rawReads] => 853494318
[FastqRCS] => 1
[enaExperiment] => ERX10632452
[enaRun] => ERR11203068
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 832
[wgsID] => 363
[refGenome] => cf4
[dateSubmitted] => 2023-06-20 10:04:00
[dateCompleted] => 2023-06-21 04:00:00
[bamMd5] => 5b1243ec3dd51c1a85d123c4eb83237d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 847132482
[primaryReads] =>
[mappedReads] => 846064714
[primaryMapped] =>
[pairedReads] => 822126900
[meanInsertSize] => 393.47
[meanReadDepth] => 41.96
[variantsCalled] => 6445128
[variantsFiltered] => 6068718
[snpCount] => 4252064
[snpHom] => 1791760
[snpHet] => 2460304
[indelCount] => 1827663
[insHom] => 290833
[delHom] => 409820
[insHet] => 527973
[delHet] => 640505
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817149
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817149/NSDTR_39675-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242