Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721111
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 613
                    [wgsID] => 363
                    [fwdFile] => NSDTR_39675_R1.fastq.gz
                    [fwdMd5] => 80963786cd3e08529aad1b2728eed343
                    [revFile] => NSDTR_39675_R2.fastq.gz
                    [revMd5] => 4179451b90bf678725886c5c14fd097c
                    [rawReads] => 853494318
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632452
                    [enaRun] => ERR11203068
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 832
                    [wgsID] => 363
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-20 10:04:00
                    [dateCompleted] => 2023-06-21 04:00:00
                    [bamMd5] => 5b1243ec3dd51c1a85d123c4eb83237d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 847132482
                    [primaryReads] => 
                    [mappedReads] => 846064714
                    [primaryMapped] => 
                    [pairedReads] => 822126900
                    [meanInsertSize] => 393.47
                    [meanReadDepth] => 41.96
                    [variantsCalled] => 6445128
                    [variantsFiltered] => 6068718
                    [snpCount] => 4252064
                    [snpHom] => 1791760
                    [snpHet] => 2460304
                    [indelCount] => 1827663
                    [insHom] => 290833
                    [delHom] => 409820
                    [insHet] => 527973
                    [delHet] => 640505
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817149
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817149/NSDTR_39675-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242