Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190193
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 236
[wgsID] => 262
[fwdFile] => NT_15614_R1.fastq.gz
[fwdMd5] => 527ca1c41d3d89cfc5facdc5ece18787
[revFile] => NT_15614_R2.fastq.gz
[revMd5] => ccf933d83200ad98666af1d013495bf1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665913
[enaRun] => ERR11257704
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 55
[wgsID] => 262
[refGenome] => cf4
[dateSubmitted] => 2022-07-02 10:40:00
[dateCompleted] => 2022-07-03 12:38:00
[bamMd5] => 399aaa44a98f2bc70e3a0fa4815f03c9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 943275613
[primaryReads] =>
[mappedReads] => 939732227
[primaryMapped] =>
[pairedReads] => 920204298
[meanInsertSize] => 514.76
[meanReadDepth] => 47.28
[variantsCalled] => 6161797
[variantsFiltered] => 5719433
[snpCount] => 3992711
[snpHom] => 2211236
[snpHet] => 1781475
[indelCount] => 1735886
[insHom] => 360709
[delHom] => 490504
[insHet] => 417115
[delHet] => 498891
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21780968
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780968/NT_15614-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242