Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190192
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 230
[wgsID] => 280
[fwdFile] => N_33957_R1.fastq.gz
[fwdMd5] => 709177554888d0a7a4069be70092401d
[revFile] => N_33957_R2.fastq.gz
[revMd5] => 063915394572eacccb958e3aff5cb46a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665929
[enaRun] => ERR11257720
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 418
[wgsID] => 280
[refGenome] => cf4
[dateSubmitted] => 2023-03-30 09:42:00
[dateCompleted] => 2023-03-31 04:37:00
[bamMd5] => 996709e958d1830a4f5255c762ac02b7
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 937447336
[primaryReads] =>
[mappedReads] => 935149833
[primaryMapped] =>
[pairedReads] => 917593398
[meanInsertSize] => 506.79
[meanReadDepth] => 45.90
[variantsCalled] => 6629789
[variantsFiltered] => 6190298
[snpCount] => 4323922
[snpHom] => 1787141
[snpHet] => 2536781
[indelCount] => 1878675
[insHom] => 282014
[delHom] => 393273
[insHet] => 566529
[delHet] => 683105
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21780967
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780967/N_33957-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242