Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190192
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 230
                    [wgsID] => 280
                    [fwdFile] => N_33957_R1.fastq.gz
                    [fwdMd5] => 709177554888d0a7a4069be70092401d
                    [revFile] => N_33957_R2.fastq.gz
                    [revMd5] => 063915394572eacccb958e3aff5cb46a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665929
                    [enaRun] => ERR11257720
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 418
                    [wgsID] => 280
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-30 09:42:00
                    [dateCompleted] => 2023-03-31 04:37:00
                    [bamMd5] => 996709e958d1830a4f5255c762ac02b7
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 937447336
                    [primaryReads] => 
                    [mappedReads] => 935149833
                    [primaryMapped] => 
                    [pairedReads] => 917593398
                    [meanInsertSize] => 506.79
                    [meanReadDepth] => 45.90
                    [variantsCalled] => 6629789
                    [variantsFiltered] => 6190298
                    [snpCount] => 4323922
                    [snpHom] => 1787141
                    [snpHet] => 2536781
                    [indelCount] => 1878675
                    [insHom] => 282014
                    [delHom] => 393273
                    [insHet] => 566529
                    [delHet] => 683105
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780967
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780967/N_33957-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242