Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190252
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 237
[wgsID] => 197
[fwdFile] => OES_24680_R1.fastq.gz
[fwdMd5] => 1dd0175b39e8c1004970398405dd6734
[revFile] => OES_24680_R2.fastq.gz
[revMd5] => cbb79f057738603da07307d4fd5980c6
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682117
[enaRun] => ERR11274547
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 342
[wgsID] => 197
[refGenome] => cf4
[dateSubmitted] => 2023-03-21 15:08:00
[dateCompleted] => 2023-03-22 11:13:00
[bamMd5] => 6f99ae270a37c84297a41537afe701c9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 893167825
[primaryReads] =>
[mappedReads] => 891125574
[primaryMapped] =>
[pairedReads] => 873606762
[meanInsertSize] => 450.69
[meanReadDepth] => 43.20
[variantsCalled] => 6449940
[variantsFiltered] => 6065596
[snpCount] => 4231472
[snpHom] => 1870103
[snpHet] => 2361369
[indelCount] => 1845483
[insHom] => 289038
[delHom] => 405994
[insHet] => 534952
[delHet] => 656665
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ18286273
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ182/ERZ18286273/OES_24680-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242