Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190252
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 237
                    [wgsID] => 197
                    [fwdFile] => OES_24680_R1.fastq.gz
                    [fwdMd5] => 1dd0175b39e8c1004970398405dd6734
                    [revFile] => OES_24680_R2.fastq.gz
                    [revMd5] => cbb79f057738603da07307d4fd5980c6
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682117
                    [enaRun] => ERR11274547
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 342
                    [wgsID] => 197
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-21 15:08:00
                    [dateCompleted] => 2023-03-22 11:13:00
                    [bamMd5] => 6f99ae270a37c84297a41537afe701c9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 893167825
                    [primaryReads] => 
                    [mappedReads] => 891125574
                    [primaryMapped] => 
                    [pairedReads] => 873606762
                    [meanInsertSize] => 450.69
                    [meanReadDepth] => 43.20
                    [variantsCalled] => 6449940
                    [variantsFiltered] => 6065596
                    [snpCount] => 4231472
                    [snpHom] => 1870103
                    [snpHet] => 2361369
                    [indelCount] => 1845483
                    [insHom] => 289038
                    [delHom] => 405994
                    [insHet] => 534952
                    [delHet] => 656665
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ18286273
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ182/ERZ18286273/OES_24680-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242