Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365195
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 488
[wgsID] => 315
[fwdFile] => OES_24700_R1.fastq.gz
[fwdMd5] => 5bb5e207a601ab4ca8aabc8d364339ce
[revFile] => OES_24700_R2.fastq.gz
[revMd5] => d0299acb2f91cdf80cb58810f0648c0d
[rawReads] => 572052360
[FastqRCS] => 1
[enaExperiment] => ERX10255905
[enaRun] => ERR10807438
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 489
[wgsID] => 315
[refGenome] => cf4
[dateSubmitted] => 2023-06-22 10:00:00
[dateCompleted] => 2023-06-23 06:01:00
[bamMd5] => dfc0c3dff74d4f1b6b7161816d7021ea
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 524204493
[primaryReads] =>
[mappedReads] => 522729987
[primaryMapped] =>
[pairedReads] => 509037594
[meanInsertSize] => 420.99
[meanReadDepth] => 24.23
[variantsCalled] => 6413198
[variantsFiltered] => 6113556
[snpCount] => 4288530
[snpHom] => 1767111
[snpHet] => 2521419
[indelCount] => 1835693
[insHom] => 318943
[delHom] => 436323
[insHet] => 511195
[delHet] => 613515
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617051
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617051/OES_24700-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242