Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365195
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 488
                    [wgsID] => 315
                    [fwdFile] => OES_24700_R1.fastq.gz
                    [fwdMd5] => 5bb5e207a601ab4ca8aabc8d364339ce
                    [revFile] => OES_24700_R2.fastq.gz
                    [revMd5] => d0299acb2f91cdf80cb58810f0648c0d
                    [rawReads] => 572052360
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255905
                    [enaRun] => ERR10807438
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 489
                    [wgsID] => 315
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-22 10:00:00
                    [dateCompleted] => 2023-06-23 06:01:00
                    [bamMd5] => dfc0c3dff74d4f1b6b7161816d7021ea
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 524204493
                    [primaryReads] => 
                    [mappedReads] => 522729987
                    [primaryMapped] => 
                    [pairedReads] => 509037594
                    [meanInsertSize] => 420.99
                    [meanReadDepth] => 24.23
                    [variantsCalled] => 6413198
                    [variantsFiltered] => 6113556
                    [snpCount] => 4288530
                    [snpHom] => 1767111
                    [snpHet] => 2521419
                    [indelCount] => 1835693
                    [insHom] => 318943
                    [delHom] => 436323
                    [insHet] => 511195
                    [delHet] => 613515
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617051
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617051/OES_24700-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242