Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190176
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 238
                    [wgsID] => 251
                    [fwdFile] => OH_33203_R1.fastq.gz
                    [fwdMd5] => f88d9dd3aa15caae744807f128790a48
                    [revFile] => OH_33203_R2.fastq.gz
                    [revMd5] => d131f409ae2a49c36ca8e959ac0239cd
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677692
                    [enaRun] => ERR11270104
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 396
                    [wgsID] => 251
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-28 15:38:00
                    [dateCompleted] => 2023-03-29 10:11:00
                    [bamMd5] => fcdbb3195b1c0c74425c03e434e32592
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 914503640
                    [primaryReads] => 
                    [mappedReads] => 911189665
                    [primaryMapped] => 
                    [pairedReads] => 891005950
                    [meanInsertSize] => 421.73
                    [meanReadDepth] => 38.53
                    [variantsCalled] => 6096449
                    [variantsFiltered] => 5777435
                    [snpCount] => 4044658
                    [snpHom] => 2069566
                    [snpHet] => 1975092
                    [indelCount] => 1741875
                    [insHom] => 334821
                    [delHom] => 464324
                    [insHet] => 440366
                    [delHet] => 534284
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782181
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782181/OH_33203-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242