Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190176
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 238
[wgsID] => 251
[fwdFile] => OH_33203_R1.fastq.gz
[fwdMd5] => f88d9dd3aa15caae744807f128790a48
[revFile] => OH_33203_R2.fastq.gz
[revMd5] => d131f409ae2a49c36ca8e959ac0239cd
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677692
[enaRun] => ERR11270104
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 396
[wgsID] => 251
[refGenome] => cf4
[dateSubmitted] => 2023-03-28 15:38:00
[dateCompleted] => 2023-03-29 10:11:00
[bamMd5] => fcdbb3195b1c0c74425c03e434e32592
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 914503640
[primaryReads] =>
[mappedReads] => 911189665
[primaryMapped] =>
[pairedReads] => 891005950
[meanInsertSize] => 421.73
[meanReadDepth] => 38.53
[variantsCalled] => 6096449
[variantsFiltered] => 5777435
[snpCount] => 4044658
[snpHom] => 2069566
[snpHet] => 1975092
[indelCount] => 1741875
[insHom] => 334821
[delHom] => 464324
[insHet] => 440366
[delHet] => 534284
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21782181
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782181/OH_33203-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242