Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190253
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 240
                    [wgsID] => 208
                    [fwdFile] => PAP_32323_R1.fastq.gz
                    [fwdMd5] => c84ed4ee1b30edc8af70cac4115aa5ff
                    [revFile] => PAP_32323_R2.fastq.gz
                    [revMd5] => e914990ae5cdc7c377a30ec9ac577ab2
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679355
                    [enaRun] => ERR11271785
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 252
                    [wgsID] => 208
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-22 08:49:00
                    [dateCompleted] => 2022-11-24 23:03:00
                    [bamMd5] => c79ad49305cab891ca673e778340a959
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1025002030
                    [primaryReads] => 
                    [mappedReads] => 759783676
                    [primaryMapped] => 
                    [pairedReads] => 745048340
                    [meanInsertSize] => 481.66
                    [meanReadDepth] => 31.58
                    [variantsCalled] => 6417957
                    [variantsFiltered] => 6087253
                    [snpCount] => 4276168
                    [snpHom] => 1806266
                    [snpHet] => 2469902
                    [indelCount] => 1821443
                    [insHom] => 285223
                    [delHom] => 402793
                    [insHet] => 522370
                    [delHet] => 648548
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375574
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375574/PAP_32323-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242