Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN23314806
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 746
[wgsID] => 448
[fwdFile] => SRR16998409_1.fastq.gz
[fwdMd5] =>
[revFile] => SRR16998409_2.fastq.gz
[revMd5] =>
[rawReads] => 1297064860
[FastqRCS] => 0
[enaExperiment] => SRX13188662
[enaRun] => SRR16998409
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1654
[wgsID] => 448
[refGenome] => cf4
[dateSubmitted] => 2024-05-15 16:27:50
[dateCompleted] => 2024-05-16 12:22:41
[bamMd5] => d5d570235cd36809319f90f25aae51ad
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 650745194
[primaryReads] => 646898024
[mappedReads] => 648619266
[primaryMapped] => 644772096
[pairedReads] => 632620670
[meanInsertSize] => 690.70
[meanReadDepth] => 32.10
[variantsCalled] => 6672833
[variantsFiltered] => 6347410
[snpCount] => 4452155
[snpHom] =>
[snpHet] =>
[indelCount] => 1906632
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
