Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189991
                    [wgsExptID] => 21
                    [Batch] => Edinburgh_11
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 2018-11-13
                    [FastqID] => 241
                    [wgsID] => 39
                    [fwdFile] => PMD_35478_R1.fastq.gz
                    [fwdMd5] => b8545dd685de50ae1312b901a6f1691e
                    [revFile] => PMD_35478_R2.fastq.gz
                    [revMd5] => b347d5865714a594f231728d6a3b85a3
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10641008
                    [enaRun] => ERR11213960
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 86
                    [wgsID] => 39
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-06 12:46:00
                    [dateCompleted] => 2022-10-07 07:04:00
                    [bamMd5] => c6cf316059ed946defa5cbba9d44f8a4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 840881010
                    [primaryReads] => 
                    [mappedReads] => 826261094
                    [primaryMapped] => 
                    [pairedReads] => 808362910
                    [meanInsertSize] => 431.22
                    [meanReadDepth] => 43.66
                    [variantsCalled] => 6228538
                    [variantsFiltered] => 5861796
                    [snpCount] => 4083297
                    [snpHom] => 2061937
                    [snpHet] => 2021360
                    [indelCount] => 1788986
                    [insHom] => 329504
                    [delHom] => 456410
                    [insHet] => 465970
                    [delHet] => 572077
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736967
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736967/PMD_35478-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242