Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189991
[wgsExptID] => 21
[Batch] => Edinburgh_11
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] => 2018-11-13
[FastqID] => 241
[wgsID] => 39
[fwdFile] => PMD_35478_R1.fastq.gz
[fwdMd5] => b8545dd685de50ae1312b901a6f1691e
[revFile] => PMD_35478_R2.fastq.gz
[revMd5] => b347d5865714a594f231728d6a3b85a3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10641008
[enaRun] => ERR11213960
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 86
[wgsID] => 39
[refGenome] => cf4
[dateSubmitted] => 2022-10-06 12:46:00
[dateCompleted] => 2022-10-07 07:04:00
[bamMd5] => c6cf316059ed946defa5cbba9d44f8a4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 840881010
[primaryReads] =>
[mappedReads] => 826261094
[primaryMapped] =>
[pairedReads] => 808362910
[meanInsertSize] => 431.22
[meanReadDepth] => 43.66
[variantsCalled] => 6228538
[variantsFiltered] => 5861796
[snpCount] => 4083297
[snpHom] => 2061937
[snpHet] => 2021360
[indelCount] => 1788986
[insHom] => 329504
[delHom] => 456410
[insHet] => 465970
[delHet] => 572077
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21736967
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736967/PMD_35478-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242