Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21035352
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 880
[wgsID] => 451
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1071723030
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1657
[wgsID] => 451
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:41:51
[dateCompleted] => 2024-06-11 20:45:00
[bamMd5] => ff9981a35ddab2ff74ffcf2c5e1395b8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 358585756
[primaryReads] => 356824481
[mappedReads] => 358303686
[primaryMapped] => 356542411
[pairedReads] => 354066720
[meanInsertSize] => 296.13
[meanReadDepth] => 16.98
[variantsCalled] => 6229928
[variantsFiltered] => 5981064
[snpCount] => 4219312
[snpHom] => 1827232
[snpHet] => 2392080
[indelCount] => 1770926
[insHom] => 291706
[delHom] => 411685
[insHet] => 483567
[delHet] => 614599
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
