Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036528
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 881
[wgsID] => 452
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1002994008
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1658
[wgsID] => 452
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:42:24
[dateCompleted] => 2024-06-11 20:22:21
[bamMd5] => a5dbbb78f9e692418877a8eef50ee407
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 337308493
[primaryReads] => 333949114
[mappedReads] => 336880690
[primaryMapped] => 333521311
[pairedReads] => 320684840
[meanInsertSize] => 374.56
[meanReadDepth] => 15.84
[variantsCalled] => 6038822
[variantsFiltered] => 5803396
[snpCount] => 4121742
[snpHom] => 1846502
[snpHet] => 2275240
[indelCount] => 1689635
[insHom] => 319165
[delHom] => 442760
[insHet] => 429701
[delHet] => 528380
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
